Basic Information
Locus ID:
gene.Thate02g28560
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 544912768 | 544941090 | - | gene.Thate02g28560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 84,009.92 Da | 51.17 | 96.35 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 664 | 705 | 3.34586E-24 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 385 | 630 | 1.4E-28 | IPR001245 |
| Pfam | PF04564 | U-box domain | 660 | 731 | 9.4E-20 | IPR003613 |
| Pfam | PF08969 | USP8 dimerisation domain | 8 | 98 | 1.5E-6 | IPR015063 |
| SUPERFAMILY | SSF57850 | RING/U-box | 657 | 731 | 1.85E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 362 | 630 | 3.69E-50 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 359 | 452 | 4.1E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 453 | 648 | 4.8E-37 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 653 | 735 | 2.3E-29 | IPR013083 |
| Gene3D | G3DSA:1.20.58.80 | - | 6 | 122 | 1.1E-18 | - |
| SMART | SM00504 | Ubox_2 | 663 | 726 | 1.4E-28 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 380 | 651 | 24.004492 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 659 | 733 | 38.321339 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 166 | - | - |
| Coils | Coil | Coil | 249 | 276 | - | - |
| Coils | Coil | Coil | 284 | 339 | - | - |
| Coils | Coil | Coil | 73 | 93 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_020704746.2 | U-box domain-containing protein 33 isoform X2 [Dendrobium catenatum] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T3CA89 | E3 ubiquitin ligase OS=Dendrobium nobile OX=94219 GN=KFK09_001227 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology