Basic Information
Locus ID:
gene.Thate02g27720
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 532371981 | 532380899 | + | gene.Thate02g27720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.04 | 21,496.29 Da | 54.05 | 74.10 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 82 | 155 | 4.1E-18 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 60 | 155 | 2.03E-22 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 56 | 160 | 3.1E-21 | IPR016135 |
| SMART | SM00212 | ubc_7 | 60 | 188 | 0.0018 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 41 | 188 | 17.316479 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024965277.1 | ubiquitin-conjugating enzyme E2-17 kDa [Cynara cardunculus var. scolymus] | 0 |
| P25867 | Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster OX=7227 GN=eff PE=1 SV=1 | 0 | |
| TrEMBL | A0A2B4SUZ5 | Ubiquitin-conjugating enzyme E2 D1 OS=Stylophora pistillata OX=50429 GN=Ube2d1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 8 | gene.Thate01g12950, gene.Thate02g16640, gene.Thate02g27670 ... |