Basic Information
Locus ID:
gene.Thate02g27300
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
U2 snRNP auxiliary factor large subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 525702191 | 525704576 | - | gene.Thate02g27300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 26,926.03 Da | 55.03 | 70.84 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 182 | 235 | 9.46E-9 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 209 | 230 | 9.5E-11 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 170 | 208 | 9.5E-11 | IPR012677 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 122 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60900.1 | U2 snRNP auxilliary factor, large subunit, splicing factor. | 0 |
| RefSeq | XP_024519323.1 | splicing factor U2af large subunit B isoform X5 [Selaginella moellendorffii] | 0 |
| Q8L716 | Splicing factor U2af large subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF65B PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2QLC0 | Splicing factor U2af large subunit OS=Ceratopteris richardii OX=49495 GN=KP509_34G068300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03870.v2.2 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate02g16090, gene.Thate02g27300, gene.Thate03g17860 ... |