Basic Information
Locus ID:
gene.Thate02g25210
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 494375659 | 494376945 | - | gene.Thate02g25210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 47,489.24 Da | 65.14 | 78.15 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 129 | 172 | 4.66212E-17 | - |
| Pfam | PF13639 | Ring finger domain | 129 | 172 | 1.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 178 | 1.64E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 180 | 1.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 130 | 171 | 6.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 172 | 13.005633 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 358 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008801472.2 | E3 ubiquitin-protein ligase ATL42-like [Phoenix dactylifera] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B7CL79 | E3 ubiquitin-protein ligase ATL42-like OS=Phoenix dactylifera OX=42345 GN=LOC103715572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology