Basic Information
Locus ID:
gene.Thate02g23930
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 451436423 | 451439124 | - | gene.Thate02g23930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 46,446.15 Da | 49.55 | 81.81 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 171 | 206 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 226 | 264 | 0.23 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 73 | 348 | 2.47E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 350 | 6.6E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 221 | 264 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 72 | 119 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 307 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 206 | 2.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 348 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 1.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 171 | 210 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 171 | 215 | 13.148488 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 193 | 207 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_009401237.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804J6I9 | ANAPC4_WD40 domain-containing protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103985308 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate02g17380, gene.Thate02g23830, gene.Thate02g23890 ... |