Basic Information
Locus ID:
gene.Thate02g23920
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 450829325 | 450886052 | - | gene.Thate02g23920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 44,408.80 Da | 45.77 | 78.01 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 171 | 206 | 2.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 268 | 0.0035 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 78 | 376 | 5.5E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 354 | 4.5E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 312 | 352 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 268 | 0.95 | IPR001680 |
| SMART | SM00320 | WD40_4 | 72 | 119 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 206 | 3.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 0.78 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 311 | 21.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 171 | 210 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 171 | 210 | 10.732868 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 193 | 207 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27570.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_009401237.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Musa acuminata subsp. malaccensis] | 0 |
| Q3E906 | Cell division cycle 20.5, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-5 PE=1 SV=3 | 0 | |
| TrEMBL | A0A4V4H8B2 | ANAPC4_WD40 domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb05t19720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate02g17380, gene.Thate02g23830, gene.Thate02g23890 ... |