Basic Information
Locus ID:
gene.Thate02g23830
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 449900628 | 449901761 | + | gene.Thate02g23830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 41,591.67 Da | 43.91 | 80.08 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 266 | 0.0042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 173 | 208 | 1.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 80 | 374 | 2.88E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 352 | 3.1E-67 | IPR015943 |
| SMART | SM00320 | WD40_4 | 74 | 121 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 266 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 309 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 166 | 208 | 2.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 310 | 350 | 14.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 173 | 212 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 173 | 217 | 13.148488 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 195 | 209 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_047050026.1 | cell division cycle 20.2, cofactor of APC complex-like [Lolium rigidum] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | R7W1U1 | Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate02g17380, gene.Thate02g23830, gene.Thate02g23890 ... |