Basic Information
Locus ID:
gene.Thate02g23260
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 429144613 | 429146771 | - | gene.Thate02g23260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 28,814.13 Da | 58.09 | 65.20 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 86 | 131 | 2.6E-7 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 126 | 3.97E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 146 | 2.6E-9 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 85 | 143 | 0.0049 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 198 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_039834422.1 | U-box domain-containing protein 4-like [Panicum virgatum] | 0 |
| Q6EUK7 | U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB4 PE=2 SV=1 | 0 | |
| TrEMBL | J3LB63 | RING-type E3 ubiquitin transferase OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20369, jg21947 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_201 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017799 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25993, Sbi_jg9813 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18865 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023818 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45677, Sgl50436 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000032504, gene:ENSEOMG00000047821 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0003440, CQ.Regalona.r1.8BG0003500 |
| Apiaceae | Apium graveolens | 1 | Ag6G00947 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G003940, scaffold013173G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112704 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.264.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri15G00108, Ftri18G17509, Ftri18G26680, Ftri1G02617 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G21350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025498m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19440.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g044380.2N, BniB05g015740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1512 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1681 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g06330 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g23260, gene.Thate07g19130 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4817 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1076 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038195 |
| Poaceae | Echinochloa crus-galli | 5 | AH04.966, AH08.278, BH05.2124, BH08.268, CH08.325 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0616790, gene-QOZ80_8BG0644370 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052819 |
| Poaceae | Oryza coarctata | 2 | Oco15G001720, Oco16G001840 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g04470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G038000 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G022540, Chr11G013480, Chr13G021670, Chr16G000700 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G521000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG042830, gene_TRIDC7BG034030 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G306800.1.cds1, TraesCS7B02G207100.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb046930_P001, Zm00001eb046940_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-41529, nbis-gene-57290 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22446, Zma_g23587 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.762, evm.TU.LG20.1139 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.950, evm.TU.Scaffold_13_RagTag.136 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23877, nbisL1-mrna-29608, nbisL1-mrna-29827 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14546 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20838, nbisL1-mrna-21662 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.32, add.evm.TU.utg000027l.28 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017383 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19148, nbisL1-mrna-20970 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23225 |
| Salicaceae | Populus euphratica | 2 | populus_peu10214, populus_peu18324 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622902 |
| Solanaceae | Solanum chilense | 1 | SOLCI002695400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010334 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.17825_chr09_-, STRG.22111_chr09_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1166, TC07G2569 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20500.v3.1 |