Basic Information
Locus ID:
gene.Thate02g23170
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 426620943 | 426691290 | + | gene.Thate02g23170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 21,465.90 Da | 35.98 | 69.90 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 81 | 133 | 1.74768E-11 | - |
| Pfam | PF12906 | RING-variant domain | 81 | 132 | 9.1E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 135 | 8.12E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 141 | 1.3E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 80 | 133 | 1.6E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 73 | 139 | 18.194618 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 71 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_038987089.1 | uncharacterized protein LOC103709027 isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B9AUP3 | uncharacterized protein LOC103709027 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103709027 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology