Basic Information
Locus ID:
gene.Thate02g17030
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 182664692 | 182673103 | + | gene.Thate02g17030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 251,041.91 Da | 43.47 | 69.64 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 939 | 994 | 1.54414E-4 | - |
| CDD | cd05162 | PWWP | 211 | 297 | 3.54355E-21 | - |
| Pfam | PF00855 | PWWP domain | 211 | 283 | 2.1E-14 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 205 | 313 | 3.07E-22 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 932 | 995 | 2.43E-6 | IPR035979 |
| Gene3D | G3DSA:2.30.30.140 | - | 204 | 304 | 9.1E-20 | - |
| SMART | SM00384 | AT_hook_2 | 679 | 691 | 1.1 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 763 | 775 | 0.7 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 784 | 796 | 83.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 742 | 754 | 16.0 | IPR017956 |
| SMART | SM00293 | PWWP_4 | 211 | 272 | 8.3E-8 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 213 | 262 | 14.703362 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2309 | 2337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 857 | 871 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 856 | 884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1138 | 1163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2177 | 2197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2301 | 2337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 781 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_029117837.1 | uncharacterized protein LOC105035631 isoform X4 [Elaeis guineensis] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XW91 | Serine/threonine-protein kinase ATM (Fragment) OS=Anthurium amnicola OX=1678845 GN=ATM_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology