Basic Information
Locus ID:
gene.Thate02g16650
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 171408121 | 171411732 | + | gene.Thate02g16650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 16,841.06 Da | 78.99 | 67.55 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 6 | 60 | 3.4E-10 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 4 | 59 | 3.79E-12 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 1 | 69 | 3.1E-17 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 5 | 89 | 0.007 | IPR027486 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 107 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_028755582.1 | 40S ribosomal protein S20-2 isoform X2 [Prosopis alba] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J8YQM9 | Ribosomal_S10 domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_020469 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology