Basic Information
Locus ID:
gene.Thate02g12330
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 96891370 | 96901934 | + | gene.Thate02g12330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 54,412.59 Da | 45.23 | 83.83 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 97 | 4.0E-13 | - |
| Pfam | PF00023 | Ankyrin repeat | 223 | 253 | 1.1E-4 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 180 | 210 | 2.2E-5 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 276 | 2.49E-44 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 381 | 1.9E-6 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 147 | 1.3E-29 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 308 | 381 | 9.0E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 149 | 275 | 2.9E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 1.5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 222 | 251 | 1.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 9.9E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 1.5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 179 | 208 | 6.7E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.923309 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.905817 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 179 | 211 | 10.36565 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 179 | 205 | 10.126261 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.522278 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 222 | 254 | 10.89985 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.63925 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 373 | 9.332136 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 222 | 248 | 10.842607 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_043687474.1 | E3 ubiquitin-protein ligase XBAT33-like [Telopea speciosissima] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5ARX2 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology