Basic Information
Locus ID:
gene.Thate02g10820
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 74706183 | 74706848 | + | gene.Thate02g10820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 23,855.79 Da | 56.44 | 66.65 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 26 | 70 | 1.08101E-31 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 27 | 68 | 3.0E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 81 | 1.5E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 82 | 3.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 28 | 68 | 4.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 28 | 69 | 13.330199 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 43 | 52 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 111 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010246977.1 | PREDICTED: E3 ubiquitin-protein ligase RNF185 isoform X1 [Nelumbo nucifera] | 0 |
| O35445 | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PSY7 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_16G01060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology