Basic Information
Locus ID:
gene.Thate02g08740
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
domain phosphoinositide-interacting protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 61708382 | 61721915 | + | gene.Thate02g08740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 42,921.26 Da | 50.92 | 81.45 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 289 | 9.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 292 | 5.13E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 38 | 368 | 2.6E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 249 | 290 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 159 | 110.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_009411684.1 | PREDICTED: autophagy-related protein 18a [Musa acuminata subsp. malaccensis] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A804K4W3 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=GSMUA_343480.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology