Basic Information
Locus ID:
gene.Thate02g07150
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 47427954 | 47429084 | + | gene.Thate02g07150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 41,302.04 Da | 62.37 | 67.69 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 162 | 205 | 2.03839E-17 | - |
| Pfam | PF13639 | Ring finger domain | 162 | 205 | 2.8E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 162 | 212 | 2.52E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 210 | 1.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 163 | 204 | 3.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 163 | 205 | 13.241681 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 262 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008796281.3 | E3 ubiquitin-protein ligase Os04g0590900 [Phoenix dactylifera] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7CCK7 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103711781 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology