Basic Information
Locus ID:
gene.Thate02g07120
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 47270177 | 47375783 | + | gene.Thate02g07120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 54,610.76 Da | 49.33 | 79.94 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.60.40.2700 | - | 262 | 339 | 4.8E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 248 | - | - |
| Coils | Coil | Coil | 112 | 132 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03560.1 | 0 | |
| RefSeq | XP_008796274.2 | uncharacterized protein LOC103711776 isoform X2 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A1D1YHD7 | 5'-3' exoribonuclease 2 OS=Anthurium amnicola OX=1678845 GN=rat1_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1698, jg29111 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1252 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023387 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29074, Sbi_jg3297 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6639 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000111 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11474, Sgl16874 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014809, gene:ENSEOMG00000035619 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0008220, CQ.Regalona.r1.2BG0021190 |
| Apiaceae | Apium graveolens | 1 | AgUnG01257 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G003860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711776 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_10.356.V1.1, AsparagusV1_10.357.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G25284, Ftri7G20751 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G03560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022176m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02540.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g034080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1514 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1546 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g00160 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07120 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7989 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1876, evm.TU.LG08.968 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016929 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1828, AH06.2812, BH05.1993 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0011550, gene-QOZ80_1BG0060190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0734460.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G021350, Oco06G022150 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49960.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G227100, gene-BS78_K111100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401229 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G019790, Chr03G005260, Chr05G010800, Chr08G005780 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G774900, Tel7E01G858100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG063680, gene_TRIDC7BG057310 |
| Poaceae | Triticum aestivum | 4 | TraesCS7A02G458000.1, TraesCS7B02G358300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb220630_P002, Zm00001eb390260_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13160 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10042, Zma_g7699 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1735, evm.TU.LG10.1226 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g00520 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.503, evm.TU.Scaffold_1_RagTag.505 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7659 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16004, nbisL1-mrna-337 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13940, nbisL1-mrna-5532 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.249, evm.TU.utg000012l.311 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005387, Maker00011138 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12782, nbisL1-mrna-8484 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16419, nbisL1-mrna-644 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636089 |
| Solanaceae | Solanum chilense | 1 | SOLCI002169700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002582 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01380.v3.1 |