Basic Information
Locus ID:
gene.Thate02g06900
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 45835299 | 45835835 | + | gene.Thate02g06900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.38 | 19,244.96 Da | 40.76 | 77.92 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 102 | 164 | 1.18257E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 23 | 84 | 2.7E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 100 | 163 | 3.2E-16 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 14 | 164 | 4.09E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 6 | 92 | 3.9E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 93 | 168 | 2.8E-24 | - |
| SMART | SM00054 | efh_1 | 59 | 87 | 0.15 | IPR002048 |
| SMART | SM00054 | efh_1 | 138 | 166 | 2.2E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 102 | 130 | 4.3E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 23 | 51 | 9.8E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 55 | 90 | 10.580154 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 134 | 169 | 13.788124 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 19 | 54 | 14.90394 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 98 | 133 | 15.154999 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 111 | 123 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 68 | 80 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 147 | 159 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 32 | 44 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_023005583.1 | probable calcium-binding protein CML18 [Cucurbita maxima] | 0 |
| Q9LQN4 | Probable calcium-binding protein CML17 OS=Arabidopsis thaliana OX=3702 GN=CML17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1L2K9 | probable calcium-binding protein CML18 OS=Cucurbita maxima OX=3661 GN=LOC111498524 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology