Basic Information
Locus ID:
gene.Thate02g06650
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 43903075 | 43923664 | - | gene.Thate02g06650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 135,545.84 Da | 40.07 | 80.80 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 511 | 546 | 6.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 982 | 1016 | 8.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 407 | 502 | 4.47E-5 | IPR011044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 903 | 1166 | 1.04E-35 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 474 | 1022 | 2.12E-43 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 1042 | 1204 | 1.2E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 370 | 603 | 9.7E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 607 | 747 | 4.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 800 | 1030 | 7.3E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 893 | 931 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 639 | 679 | 10.0 | IPR001680 |
| SMART | SM00668 | ctlh | 105 | 163 | 6.8E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 934 | 974 | 0.69 | IPR001680 |
| SMART | SM00320 | WD40_4 | 505 | 546 | 4.3E-6 | IPR001680 |
| SMART | SM00667 | Lish | 75 | 107 | 0.0015 | IPR006594 |
| SMART | SM00320 | WD40_4 | 977 | 1016 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 444 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1067 | 1109 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 549 | 590 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 499 | 160.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 984 | 1018 | 10.469233 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 105 | 163 | 13.462414 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 512 | 555 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 512 | 546 | 8.887423 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 75 | 107 | 9.435989 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 984 | 1018 | 12.580379 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_010243111.1 | PREDICTED: protein TPR2-like [Nelumbo nucifera] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7YV21 | protein TPR2-like OS=Nelumbo nucifera OX=4432 GN=LOC104587269 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology