Basic Information
Locus ID:
gene.Thate02g06600
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
zinc finger, C3HC4 type domain containing protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 43692954 | 43694735 | + | gene.Thate02g06600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 64,138.72 Da | 68.38 | 72.92 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 267 | 311 | 5.29971E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 268 | 309 | 5.1E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 268 | 316 | 1.77E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 253 | 322 | 3.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 269 | 309 | 2.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 269 | 310 | 13.713777 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 284 | 293 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 509 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010933375.1 | uncharacterized protein LOC105053788 [Elaeis guineensis] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9RW52 | RING-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105053788 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_08G005520, COCNU_10G001980 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103698592, gene-LOC103705035, gene-LOC103713033 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.82.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g05000, gene.Cymno16g04850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g06600 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.3757, BH07.4083 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0038680, gene-QOZ80_1BG0088710 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0071960.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014123, gene-QYE76_055807 |
| Poaceae | Oryza coarctata | 4 | Oco01G023980, Oco02G024750, Oco09G011970, Oco10G011940 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g61420.1, LOC_Os05g39380.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G324400, gene-BS78_09G173300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601909, Pt_Chr0601999 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G018730, Chr02G005690, Chr05G027680, Chr18G011740 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G478700, Tel3E01G561200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG043950, gene_TRIDC1BG049780 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G296100.1.cds1, TraesCS1B02G304900.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb290120_P001, Zm00001eb351820_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-11524, nbis-gene-14205, nbis-gene-24191 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11467, Zma_g27028, Zma_g28414, Zma_g8926 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g01050 |
| Zosteraceae | Zostera marina | 1 | Zosma01g12390.v3.1 |