Basic Information
Locus ID:
gene.Thate02g06120
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 41180798 | 41262517 | + | gene.Thate02g06120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 86,387.15 Da | 47.59 | 92.22 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 331 | 467 | 2.70894E-69 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 123 | 330 | 1.14531E-129 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 142 | 310 | 3.1E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 361 | 457 | 3.3E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 470 | 526 | 3.0E-12 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 660 | 720 | 1.1E-7 | IPR002121 |
| SUPERFAMILY | SSF47819 | HRDC-like | 660 | 733 | 6.32E-6 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 179 | 474 | 5.55E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 331 | 528 | 1.1E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 531 | 638 | 6.2E-23 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 654 | 725 | 8.7E-12 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 96 | 330 | 9.2E-90 | IPR027417 |
| SMART | SM00490 | helicmild6 | 377 | 458 | 4.7E-26 | IPR001650 |
| SMART | SM00487 | ultradead3 | 136 | 339 | 3.7E-25 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 133 | 560 | 3.6E-164 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 651 | 730 | 12.895864 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 355 | 497 | 19.486786 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 148 | 323 | 23.486277 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 764 | - | - |
| Coils | Coil | Coil | 54 | 99 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_038979711.1 | ATP-dependent DNA helicase Q-like 2 isoform X4 [Phoenix dactylifera] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A443P901 | ATP-dependent DNA helicase OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01619000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology