Basic Information
Locus ID:
gene.Thate02g06050
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 40996809 | 41029290 | - | gene.Thate02g06050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 43,598.43 Da | 47.48 | 75.29 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 322 | 370 | 2.0E-11 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 317 | 379 | 4.73E-16 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 43 | 252 | 3.35E-19 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 303 | 385 | 3.6E-16 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 42 | 263 | 5.2E-7 | IPR027267 |
| SMART | SM00326 | SH3_2 | 318 | 373 | 4.0E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 315 | 374 | 19.584932 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 300 | - | - |
| Coils | Coil | Coil | 1 | 28 | - | - |
| Coils | Coil | Coil | 187 | 207 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_020260707.1 | SH3 domain-containing protein 2-like [Asparagus officinalis] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WI39 | SH3 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_07241 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology