Basic Information
Locus ID:
gene.Thate02g04720
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 31299698 | 31305008 | + | gene.Thate02g04720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 136,117.34 Da | 34.42 | 92.61 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 317 | 2.27995E-73 | - |
| Pfam | PF04053 | Coatomer WD associated region | 340 | 768 | 1.6E-133 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 3.9E-7 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 815 | 1213 | 1.3E-158 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 4.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 6.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 231 | 3.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 276 | 0.0045 | IPR001680 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 322 | 548 | 9.81E-8 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 315 | 9.62E-73 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 319 | 7.4E-124 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 640 | 812 | 2.0E-62 | - |
| SMART | SM00320 | WD40_4 | 279 | 317 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 3.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 7.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 1.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 4.0E-6 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1209 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 234 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 165 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 172 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 277 | 12.209223 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 15.688272 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.616343 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 4.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 4.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 4.3E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_010919611.1 | coatomer subunit alpha-1 [Elaeis guineensis] | 0 |
| Q0J3D9 | Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IF46 | Coatomer subunit alpha OS=Cocos nucifera OX=13894 GN=COCNU_07G005410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology