Basic Information
Locus ID:
gene.Thate02g04270
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 27047727 | 27452383 | + | gene.Thate02g04270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 494,771.31 Da | 43.37 | 89.97 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3342 | 3511 | 1.4E-10 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2235 | 2391 | 2.4E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4203 | 4324 | 9.6E-7 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1998 | 2162 | 2.8E-9 | IPR009291 |
| Pfam | PF00169 | PH domain | 799 | 906 | 5.8E-7 | IPR001849 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 2.2E-63 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 105 | 1.2E-30 | IPR026854 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2856 | 2989 | 3.1E-7 | IPR010482 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 556 | 777 | 1.6E-31 | IPR031642 |
| SUPERFAMILY | SSF50729 | PH domain-like | 795 | 910 | 7.3E-8 | - |
| SMART | SM00233 | PH_update | 797 | 909 | 4.5E-6 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 796 | 907 | 8.7842 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4353 | 4389 | - | - |
| Coils | Coil | Coil | 1829 | 1849 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_017699200.2 | uncharacterized protein LOC103710761 isoform X1 [Phoenix dactylifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7MUK2 | uncharacterized protein LOC103710761 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103710761 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology