Basic Information
Locus ID:
gene.Thate02g01960
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 12897283 | 12898515 | - | gene.Thate02g01960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 44,404.94 Da | 40.97 | 102.49 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 72 | 1.1E-6 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 201 | 216 | 1.3 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 104 | 163 | 1.7E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 48 | 381 | 1.93E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 146 | 3.0E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 295 | 381 | 4.1E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 196 | 292 | 3.0E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 147 | 195 | 8.1E-10 | IPR032675 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 246 | 259 | 2.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 153 | 166 | 2.2E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | NP_563685.2 | Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana] | 0 |
| TrEMBL | A0A7I8KQ58 | LRRNT_2 domain-containing protein OS=Spirodela intermedia OX=51605 GN=SI8410_07010639 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology