Basic Information
Locus ID:
gene.Thate02g00690
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 4629282 | 4800444 | - | gene.Thate02g00690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 533,076.19 Da | 48.62 | 93.89 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 4688 | 4728 | 6.9E-8 | - |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 1383 | 1501 | 2.54E-13 | IPR036890 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4688 | 4728 | 6.31E-8 | - |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 26 | 195 | 4.17E-14 | IPR036890 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4666 | 4734 | 3.4E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 4689 | 4723 | 11.309038 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3407 | 3427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4576 | 4599 | - | - |
| Coils | Coil | Coil | 4659 | 4679 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23110.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_010935539.1 | sacsin isoform X1 [Elaeis guineensis] | 0 |
| Q9NZJ4 | Sacsin OS=Homo sapiens OX=9606 GN=SACS PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9P1Q9 | RING-type domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_48G00450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15519, jg15520, jg15521 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20517 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038501 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g203060, BVRB_9g203070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14723, Sbi_jg55498 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26052 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012539 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78101, Sgl80607 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016231, gene:ENSEOMG00000036445 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0021330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224850 |
| Apiaceae | Apium graveolens | 3 | Ag11G03650, Ag5G01576, Ag8G01977 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G006590 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716924 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2273.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G28303, Ftri8G30209 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003499m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g24010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g076400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0597 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0588 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05360 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0723s00002.v1.0, Dusal.0723s00003.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00690 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11685 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.937 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005418 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34375 |
| Poaceae | Echinochloa crus-galli | 3 | BH09.2932, BH09.2933, CH09.3142 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299580, gene-QOZ80_4BG0330270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0210490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047432 |
| Poaceae | Oryza coarctata | 2 | Oco07G019130, Oco08G018390 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G282200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300164 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001020, Chr23G001030, Chr26G018260 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G1014600, Tel2E01G951100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG077140, gene_TRIDC2BG085010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G556200.1, TraesCS2B02G571400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066370_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6183 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22214 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1450, evm.TU.LG21.1147 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g10530 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.445 |
| Salicaceae | Populus euphratica | 4 | populus_peu13938, populus_peu13939, populus_peu13940 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622327 |
| Solanaceae | Solanum chilense | 1 | SOLCI004514600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010837 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6590 |
| Tamaricaceae | Tamarix chinensis | 4 | TC07G0888, TC07G0889, TC07G0890, TC07G0891 |
| Zosteraceae | Zostera marina | 1 | Zosma01g21600.v3.1 |