Basic Information
Locus ID:
gene.Thate02g00190
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 2022171 | 2051824 | + | gene.Thate02g00190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 230,327.78 Da | 57.05 | 82.25 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1483 | 1912 | 2.62789E-118 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1530 | 1916 | 2.1E-82 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 99 | 671 | 1.09E-40 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1476 | 1910 | 1.57E-95 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1790 | 1915 | 7.1E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1423 | 1678 | 4.6E-43 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 191 | 507 | 5.5E-49 | IPR011989 |
| SMART | SM00119 | hect_3 | 1496 | 1917 | 3.2E-84 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1616 | 1917 | 57.575409 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1062 | 1092 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1993 | 2019 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1285 | 1312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 1026 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1148 | 1183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 116 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010265985.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Nelumbo nucifera] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8AT12 | HECT-type E3 ubiquitin transferase OS=Nelumbo nucifera OX=4432 GN=LOC104603621 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology