Basic Information
Locus ID:
gene.Thate01g33950
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
mediator of RNA polymerase II transcription subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 569133619 | 569134556 | + | gene.Thate01g33950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 20,246.65 Da | 47.04 | 68.52 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00012 | Hsp70 protein | 8 | 69 | 4.5E-22 | IPR013126 |
| Pfam | PF00012 | Hsp70 protein | 103 | 181 | 1.3E-24 | IPR013126 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 10 | 181 | 1.25E-38 | IPR043129 |
| Gene3D | G3DSA:3.30.420.40 | - | 3 | 182 | 2.1E-38 | - |
| Gene3D | G3DSA:3.30.30.30 | - | 102 | 145 | 8.4E-20 | - |
| ProSitePatterns | PS00297 | Heat shock hsp70 proteins family signature 1. | 10 | 17 | - | IPR018181 |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 56 | 64 | 1.9E-10 | - |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 34 | 46 | 1.9E-10 | - |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 6 | 19 | 1.9E-10 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko03040 (Spliceosome)
map03040 (Spliceosome)
ko04010 (MAPK signaling pathway)
map04010 (MAPK signaling pathway)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12580.1 | heat shock protein 70. | 0 |
| RefSeq | XP_009380663.1 | PREDICTED: heat shock cognate 70 kDa protein-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9LHA8 | Heat shock 70 kDa protein 4 OS=Arabidopsis thaliana OX=3702 GN=HSP70-4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FZV6 | Heat shock protein 70 family (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g036208mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4466, jg9925 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1089, gene_7858 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah024065, Ah024075, Ah024102 |
| Amaranthaceae | Beta vulgaris | 7 | BVRB_1g001090, BVRB_1g009980, BVRB_1g010000, BVRB_1g010020 ... |
| Amaranthaceae | Salicornia bigelovii | 23 | Sbi_jg1802, Sbi_jg19658, Sbi_jg2790, Sbi_jg2799, Sbi_jg2800 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg17400, Seu_jg7085 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00022078, GOSA_00022084 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl14506, Sgl15000, Sgl15009, Sgl18565, Sgl19684, Sgl20144 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000033389, gene:ENSEOMG00000033913 |
| Amaranthaceae | Chenopodium quinoa | 39 | CQ.Regalona.r1.1AG0012560, CQ.Regalona.r1.1AG0012580 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30175350, pistato.v30175380 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1481.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G09249, Ftri6G28205 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g07810.v2.2, Sp7g36660.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015480.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0095 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0086, Cgl07G0087 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g19540, gene.Cymno10g06190 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g33950, gene.Thate02g35410, gene.Thate04g04360 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000413 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06328 |
| Poaceae | Echinochloa crus-galli | 6 | BH01.4477, BH01.4478, BH01.4483, BH02.1965, CH01.4734 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0243100, gene-QOZ80_3BG0285160 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013679, gene-QYE76_019558, gene-QYE76_054644 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102330 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr26G004680 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G869100, Telscf29001G000200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1BG061620, gene_TRIDC2BG029110 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS5B02G517800.1.cds1, TraesCS6A02G342600.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb280370_P001, Zm00001eb309670_P001 |
| Poaceae | Zoysia japonica | 10 | nbis-gene-15907, nbis-gene-19469, nbis-gene-2069 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1231 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g32660, gene.Posoc01g33080, gene.Posoc01g38590 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14476 |
| Rhizophoraceae | Kandelia candel | 7 | add.evm.TU.utg000005l.59, add.evm.TU.utg000005l.62 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017138 |
| Salicaceae | Populus euphratica | 3 | populus_peu06415, populus_peu21246, populus_peu32250 |
| Solanaceae | Solanum chilense | 1 | SOLCI006984700 |