Basic Information
Locus ID:
gene.Thate01g33030
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 563713160 | 563723899 | - | gene.Thate01g33030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 166,178.86 Da | 48.60 | 89.69 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1112 | 1507 | 5.78253E-102 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1191 | 1509 | 2.6E-75 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 99 | 530 | 2.0E-37 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1107 | 1502 | 7.85E-87 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1059 | 1285 | 6.9E-36 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1393 | 1507 | 1.2E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 538 | 4.7E-43 | IPR011989 |
| SMART | SM00119 | hect_3 | 1124 | 1509 | 5.1E-91 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1201 | 1509 | 56.908875 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 82 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_010922508.1 | E3 ubiquitin-protein ligase UPL4 [Elaeis guineensis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6I9R9D8 | HECT-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105045807 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology