Basic Information
Locus ID:
gene.Thate01g32340
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 559369498 | 559377818 | - | gene.Thate01g32340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 30,835.48 Da | 43.92 | 93.28 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 203 | 247 | 3.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 202 | 252 | 3.3E-17 | - |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 4 | 65 | 1.28E-6 | IPR029035 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 252 | 9.2E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.50.1220 | - | 2 | 81 | 4.7E-7 | - |
| SMART | SM00184 | ring_2 | 203 | 246 | 1.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 203 | 247 | 12.725326 | IPR001841 |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008805101.2 | pyruvate decarboxylase 1-like [Phoenix dactylifera] | 0 |
| Q10MW3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YG58 | RING-H2 finger protein ATL54 (Fragment) OS=Anthurium amnicola OX=1678845 GN=ATL54 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32340 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2041, BH09.2198, CH09.2347 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306430, gene-QOZ80_4BG0337430 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045732, gene-QYE76_064127 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G197400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703590, Pt_Chr0703595 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G004870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G677900 |
| Poaceae | Triticum aestivum | 2 | TraesCS2B02G413100.1.cds1, TraesCS2D02G392600.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb073040_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5640 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21839 |