Basic Information
Locus ID:
gene.Thate01g31520
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 550137403 | 550139430 | - | gene.Thate01g31520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 72,774.65 Da | 55.62 | 97.54 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 260 | 302 | 1.22304E-26 | - |
| Pfam | PF04564 | U-box domain | 256 | 327 | 1.1E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 397 | 434 | 5.8E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 250 | 329 | 9.71E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 376 | 638 | 7.82E-25 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 330 | 1.1E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 667 | 7.0E-27 | IPR011989 |
| SMART | SM00185 | arm_5 | 522 | 560 | 73.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 395 | 435 | 9.6E-7 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 259 | 322 | 2.1E-35 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 255 | 329 | 45.574814 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 406 | 448 | 12.8974 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01830.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_020683890.1 | U-box domain-containing protein 16 [Dendrobium catenatum] | 0 |
| Q9LZW3 | U-box domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=PUB16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I0W6T5 | RING-type E3 ubiquitin transferase OS=Dendrobium catenatum OX=906689 GN=PUB16 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14712, jg3183 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20402 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031460 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g157400 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2216, Sbi_jg34303 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2561 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005939 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71050, Sgl74641 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008787, gene:ENSEOMG00000038860 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0022520, CQ.Regalona.r1.7BG0025080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30268720 |
| Apiaceae | Apium graveolens | 2 | Ag1G00562, Ag8G00030 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G004360, scaffold046440G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713429 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G19396 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G01830.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022583m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29940.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g064190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0904 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0921 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g14890 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g31520, gene.Thate04g08790 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4882 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.895 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006961 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G25317, Lb4G25586, Lb4G25587 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3711, AH05.2038, BH02.3246, BH05.2175, CH02.3998 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0038220, gene-QOZ80_1BG0088210 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0071210.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014182, gene-QYE76_055650 |
| Poaceae | Oryza coarctata | 4 | Oco01G023640, Oco02G024400, Oco09G012180, Oco10G012270 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g60860.1, LOC_Os05g39930.1, LOC_Os10g08790.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G320100, gene-BS78_09G177800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601828, Pt_Chr0702135 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G018460, Chr02G006040, Chr03G018980, Chr05G027320 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G485800, Tel3E01G548300, Tel3E01G552600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG044530, gene_TRIDC1BG050410 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G300000.1.cds1, TraesCS1B02G310100.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb149420_P001, Zm00001eb290550_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-11553, nbis-gene-14239, nbis-gene-24229 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11434, Zma_g27008, Zma_g28438, Zma_g8907 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.899, evm.TU.LG15.806 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g33570 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1903 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5673 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9507 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3626 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.315 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016965 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18684 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13838 |
| Salicaceae | Populus euphratica | 3 | populus_peu11502, populus_peu25285, populus_peu25286 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630972 |
| Solanaceae | Solanum chilense | 1 | SOLCI005719600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029384 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6630 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1019 |
| Zosteraceae | Zostera marina | 4 | Zosma01g42180.v3.1, Zosma02g22090.v3.1, Zosma03g12900.v3.1 ... |