Basic Information
Locus ID:
gene.Thate01g30800
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 542689935 | 542690396 | + | gene.Thate01g30800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 17,136.66 Da | 68.09 | 82.22 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 98 | 141 | 1.10198E-16 | - |
| Pfam | PF13639 | Ring finger domain | 98 | 141 | 3.1E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 96 | 147 | 2.7E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 146 | 6.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 99 | 140 | 4.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 99 | 141 | 13.226928 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20823.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044440972.1 | E3 ubiquitin-protein ligase EL5-like [Triticum aestivum] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NIA1 | E3 ubiquitin-protein ligase, ATL family OS=Zostera marina OX=29655 GN=ZOSMA_96G00270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology