Basic Information
Locus ID:
gene.Thate01g30790
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 542591493 | 542591990 | + | gene.Thate01g30790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 18,222.87 Da | 45.11 | 80.42 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 101 | 144 | 1.226E-15 | - |
| Pfam | PF13639 | Ring finger domain | 101 | 144 | 1.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 151 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 153 | 4.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 102 | 143 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 102 | 144 | 12.489278 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01880.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009405748.1 | PREDICTED: RING-H2 finger protein ATL17-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9LZV8 | RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N0I4 | Putative RING-H2 finger protein ATL64-like OS=Cocos nucifera OX=13894 GN=COCNU_04G010430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology