Basic Information
Locus ID:
gene.Thate01g30250
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 538853286 | 538888973 | - | gene.Thate01g30250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 64,420.83 Da | 44.10 | 84.14 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 175 | 372 | 5.34671E-98 | - |
| CDD | cd18794 | SF2_C_RecQ | 373 | 506 | 1.75611E-63 | - |
| Pfam | PF16124 | RecQ zinc-binding | 509 | 578 | 1.0E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 183 | 352 | 3.4E-16 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 388 | 496 | 4.0E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 221 | 517 | 2.67E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 138 | 372 | 1.4E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 373 | 580 | 4.6E-60 | IPR027417 |
| SMART | SM00490 | helicmild6 | 415 | 497 | 3.2E-22 | IPR001650 |
| SMART | SM00487 | ultradead3 | 177 | 381 | 6.1E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 175 | 579 | 1.8E-151 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 387 | 545 | 18.371403 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 189 | 365 | 20.122519 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 304 | 313 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 150 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_038977882.1 | ATP-dependent DNA helicase Q-like 1 [Phoenix dactylifera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZWZ1 | ATP-dependent DNA helicase OS=Phoenix dactylifera OX=42345 GN=LOC120108368 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology