Basic Information
Locus ID:
gene.Thate01g16740
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 269628180 | 269800004 | - | gene.Thate01g16740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.93 | 125,059.74 Da | 66.47 | 60.83 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 710 | 839 | 2.35094E-59 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 722 | 830 | 2.2E-30 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 515 | 685 | 2.6E-48 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 16 | 56 | 3.42E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 563 | 847 | 1.36E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 700 | 872 | 3.1E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 465 | 699 | 4.6E-85 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 19 | 63 | 1.2E-5 | - |
| SMART | SM00487 | ultradead3 | 510 | 713 | 2.0E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 23 | 56 | 1.6E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 750 | 830 | 7.7E-33 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 491 | 519 | 9.769423 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 522 | 696 | 30.785948 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 22 | 56 | 10.836801 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 725 | 869 | 24.610592 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 28 | 54 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 642 | 650 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1005 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1017 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 1071 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 916 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 985 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1051 | 1071 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 150 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_027068447.1 | DEAD-box ATP-dependent RNA helicase 46-like [Coffea arabica] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P6SRE2 | DEAD-box ATP-dependent RNA helicase 46-like OS=Coffea arabica OX=13443 GN=LOC113693885 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology