halophFGD

Basic Information

Locus ID: gene.Thate01g16040

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: Protein translocase subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr01	258847659	259133538	+	gene.Thate01g16040

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.29	115,668.33 Da	48.20	88.10	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18803	SF2_C_secA	484	744	1.36643E-70	IPR044722
CDD	cd17928	DEXDc_SecA	125	478	2.43425E-136	-
Pfam	PF01043	SecA preprotein cross-linking domain	316	422	3.8E-35	IPR011130
Pfam	PF07516	SecA Wing and Scaffold domain	771	986	1.5E-54	IPR011116
Pfam	PF07517	SecA DEAD-like domain	99	466	6.4E-125	IPR011115
SUPERFAMILY	SSF81886	Helical scaffold and wing domains of SecA	774	993	3.01E-61	IPR036266
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	100	479	1.81E-77	IPR027417
SUPERFAMILY	SSF81767	Pre-protein crosslinking domain of SecA	310	432	2.35E-42	IPR036670
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	480	768	1.16E-51	IPR027417
Gene3D	G3DSA:3.40.50.300	-	105	480	4.4E-176	IPR027417
Gene3D	G3DSA:3.40.50.300	-	481	773	6.2E-87	IPR027417
Gene3D	G3DSA:3.90.1440.10	-	312	432	4.4E-176	-
Gene3D	G3DSA:1.10.3060.10	Helical scaffold and wing domains of SecA	775	988	7.4E-57	-
SMART	SM00958	SecA_PP_bind_2	311	422	1.8E-55	IPR011130
SMART	SM00957	SecA_DEAD_2	90	466	4.5E-254	IPR011115
TIGRFAM	TIGR00963	secA: preprotein translocase, SecA subunit	111	975	0.0	IPR000185
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	172	347	18.37462	IPR014001
ProSiteProfiles	PS51196	SecA family profile.	86	774	155.1698	IPR014018
ProSitePatterns	PS01312	SecA family signature.	566	581	-	IPR020937
PRINTS	PR00906	SecA protein signature	253	273	1.0E-70	IPR000185
PRINTS	PR00906	SecA protein signature	403	425	1.0E-70	IPR000185
PRINTS	PR00906	SecA protein signature	477	490	1.0E-70	IPR000185
PRINTS	PR00906	SecA protein signature	440	457	1.0E-70	IPR000185
PRINTS	PR00906	SecA protein signature	146	170	1.0E-70	IPR000185
PRINTS	PR00906	SecA protein signature	184	198	1.0E-70	IPR000185
PRINTS	PR00906	SecA protein signature	200	210	1.0E-70	IPR000185
Hamap	MF_01382	Protein translocase subunit SecA [secA].	86	989	19.288906	IPR000185
MobiDBLite	mobidb-lite	consensus disorder prediction	995	1025	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	42	71	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	995	1010	-	-

Gene Ontology

Biological Process:

GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)

Molecular Function:

GO:0005524 (ATP binding)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])

Pathway:

ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G01800.1	Albino or Glassy Yellow 1. Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression.
RefSeq	XP_020113851.1	protein translocase subunit SECA1, chloroplastic [Ananas comosus]
Swiss-Prot	Q9SYI0	Protein translocase subunit SECA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA1 PE=1 SV=2
TrEMBL	A0A6P5GYS9	Protein translocase subunit SecA OS=Ananas comosus OX=4615 GN=LOC109728004 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg10458, jg9019
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1077, gene_13408
Amaranthaceae	Atriplex hortensis	2	Ah024121, Ah031607
Amaranthaceae	Beta vulgaris	2	BVRB_1g010050, BVRB_5g122730
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ... Sbi_jg58084
Amaranthaceae	Salicornia europaea	2	Seu_jg25704, Seu_jg7111
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004576, GOSA_00020180
Amaranthaceae	Suaeda glauca	4	Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ... gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ... CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae	Pistacia vera	2	pistato.v30007280, pistato.v30039110
Apiaceae	Apium graveolens	3	Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae	Cocos nucifera	2	COCNU_01G000270, COCNU_15G003170
Arecaceae	Phoenix dactylifera	2	gene-LOC103701417, gene-LOC103720122
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G32559, Ftri18G11286
Brassicaceae	Arabidopsis thaliana	2	AT1G21650.3, AT4G01800.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae	Brassica nigra	2	BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1867, Ceq06G0547
Casuarinaceae	Casuarina glauca	2	Cgl03G2007, Cgl06G0567
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae	Dunaliella salina	2	Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae	Plantago ovata	2	Pov_00016539, Pov_00021694
Plumbaginaceae	Limonium bicolor	2	Lb4G22942, Lb6G30841
Poaceae	Echinochloa crus-galli	5	AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ... gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae	Lolium multiflorum	3	gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae	Oryza coarctata	3	Oco01G009280, Oco02G009570, Oco22G003520
Poaceae	Oryza sativa	2	LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G139800, gene-BS78_05G097000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0103927, Pt_Chr0603665
Poaceae	Sporobolus alterniflorus	6	Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ... Chr16G010730, Chr17G009810
Poaceae	Thinopyrum elongatum	2	Tel3E01G338700, Tel4E01G158600
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG028190, gene_TRIDC3BG032070 ... gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae	Triticum aestivum	6	TraesCS3A02G198400.1, TraesCS3B02G222700.1 ... TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae	Zea mays	2	Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae	Zoysia japonica	2	nbis-gene-27238, nbis-gene-6517
Poaceae	Zoysia macrostachya	2	Zma_g10242, Zma_g18533
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae	Kandelia obovata	2	Maker00011737, Maker00013085
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae	Populus euphratica	2	populus_peu27429, populus_peu32459
Solanaceae	Lycium barbarum	2	gene-LOC132627149, gene-LOC132644885
Solanaceae	Solanum chilense	2	SOLCI001197400, SOLCI003112400
Solanaceae	Solanum pennellii	2	gene-LOC107002391, gene-LOC107004481
Tamaricaceae	Reaumuria soongarica	2	gene_17557, gene_866
Tamaricaceae	Tamarix chinensis	2	TC03G2545, TC07G1717
Zosteraceae	Zostera marina	4	Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ... Zosma07g00120.v3.1