Basic Information
Locus ID:
gene.Thate01g14820
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Protein TRANSPORT INHIBITOR RESPONSE 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 203213412 | 203222751 | - | gene.Thate01g14820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 49,723.33 Da | 42.76 | 95.74 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 27 | 422 | 1.55E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 446 | 4.4E-124 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 355 | 380 | 49.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 246 | 270 | 25.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 306 | 329 | 36.0 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12820.1 | auxin signaling F-box 3. Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. | 0 |
| RefSeq | XP_026663364.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Phoenix dactylifera] | 0 |
| Q9LPW7 | Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana OX=3702 GN=AFB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XNE5 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Anthurium amnicola OX=1678845 GN=TIR1_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology