Basic Information
Locus ID:
gene.Thate01g14200
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 167150259 | 167151530 | + | gene.Thate01g14200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 45,556.96 Da | 49.31 | 98.94 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 93 | 2.95225E-18 | - |
| Pfam | PF04564 | U-box domain | 31 | 118 | 9.1E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 122 | 2.41E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 142 | 383 | 3.87E-13 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 121 | 6.4E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 133 | 405 | 5.6E-14 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 34 | 114 | 7.2E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 121 | 30.121374 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021622562.1 | E3 ubiquitin-protein ligase PUB23 [Manihot esculenta] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843W414 | RING-type E3 ubiquitin transferase OS=Colocasia esculenta OX=4460 GN=Taro_032481 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology