Basic Information
Locus ID:
gene.Thate01g12020
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 108180003 | 108204603 | - | gene.Thate01g12020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 36,802.54 Da | 39.02 | 90.43 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 40 | 88 | 3.008E-15 | - |
| Pfam | PF12906 | RING-variant domain | 40 | 87 | 5.2E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 92 | 1.69E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 95 | 2.0E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 39 | 88 | 3.0E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 32 | 94 | 20.967432 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_020705072.1 | uncharacterized protein LOC110115989 [Dendrobium catenatum] | 0 |
| TrEMBL | A0A835U4X2 | RING-CH-type domain-containing protein OS=Vanilla planifolia OX=51239 GN=HPP92_027126 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology