Basic Information
Locus ID:
gene.Thate01g11660
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
CS domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 100716270 | 100736949 | - | gene.Thate01g11660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 33,643.65 Da | 39.15 | 67.04 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06467 | p23_NUDC_like | 144 | 228 | 6.74007E-43 | - |
| Pfam | PF04969 | CS domain | 143 | 217 | 1.4E-20 | IPR007052 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 128 | 243 | 9.0E-40 | IPR008978 |
| Gene3D | G3DSA:2.60.40.790 | - | 135 | 262 | 2.7E-47 | IPR008978 |
| ProSiteProfiles | PS51203 | CS domain profile. | 139 | 228 | 18.979162 | IPR007052 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| Coils | Coil | Coil | 105 | 125 | - | - |
| Coils | Coil | Coil | 63 | 93 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53400.1 | HSP20-like chaperones superfamily protein. Encodes BOBBER1 (BOB1), a non-canonical small heat shock protein required for both development and thermotolerance. BOB1 is cytoplasmic at basal temperatures but forms heat shock granules containing canonical small heat shock proteins at high temperatures. | 0 |
| RefSeq | XP_008780424.2 | protein BOBBER 1-like [Phoenix dactylifera] | 0 |
| Q9LV09 | Protein BOBBER 1 OS=Arabidopsis thaliana OX=3702 GN=BOB1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BL22 | protein BOBBER 1-like OS=Phoenix dactylifera OX=42345 GN=LOC103700242 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10253, jg13886, jg33931 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3306 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018630 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42066, Sbi_jg48124 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27481 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020062 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01347, Sgl06425, Sgl06429 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002823, gene:ENSEOMG00000025603 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0005070, CQ.Regalona.r1.3BG0005080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30164490 |
| Apiaceae | Apium graveolens | 3 | Ag10G02521, Ag3G02043, Ag4G02667 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G007810, COCNU_03G005570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103700242, gene-LOC103721229 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1670.V1.1, AsparagusV1_07.3545.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G18396 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G27890.1, AT5G53400.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014254m.g.v1.0, Thhalv10025870m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g03220.v2.2, Sp6g15540.v2.2, Sp7g25860.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g031720.2N, BniB05g009540.2N, BniB05g032700.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1632 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1766 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g11270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0042s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g11660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.672 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00039436, Pov_00041150 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04187 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.919, BH06.951, CH06.1045 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0514830, gene-QOZ80_6BG0466540 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0323630.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028929 |
| Poaceae | Oryza coarctata | 3 | Oco04G022050, Oco11G005970, Oco12G006010 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g51000.1, LOC_Os06g12530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G097500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404761, Pt_Chr0404772, Pt_Chr0603407 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G019500, Chr14G004470, Chr21G003850 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G826900, Tel3E01G827000, Tel7E01G348500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG071430, gene_TRIDC3AG071440 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G502900.1.cds1, TraesCS3A02G503000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb279760_P002, Zm00001eb372220_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35135 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31632 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1540, evm.TU.LG02.753, evm.TU.LG11.1665 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g24440 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.159, evm.TU.Scaffold_1_RagTag.628 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14367, nbisL1-mrna-7501 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15209 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5649 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011184 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16897, nbisL1-mrna-8406 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19075, nbisL1-mrna-748 |
| Salicaceae | Populus euphratica | 3 | populus_peu03281, populus_peu28035, populus_peu34121 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132609849, gene-LOC132610490, gene-LOC132611005 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI002031800, SOLCI002031900, SOLCI004703900 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107009964, gene-LOC107015157, gene-LOC107030486 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9965 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1521, TC08G1393 |
| Zosteraceae | Zostera marina | 3 | Zosma03g30870.v3.1, Zosma05g16080.v3.1, Zosma06g15200.v3.1 |