Basic Information
Locus ID:
gene.Thate01g11490
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
U-box domain-containing protein 21-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 98062572 | 98063885 | + | gene.Thate01g11490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 47,256.26 Da | 41.45 | 97.57 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 39 | 81 | 1.47556E-24 | - |
| Pfam | PF04564 | U-box domain | 35 | 106 | 5.4E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 123 | 414 | 1.5E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 111 | 6.28E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 118 | 434 | 1.0E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 109 | 1.9E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 38 | 101 | 4.0E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 34 | 108 | 42.178062 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_010936891.1 | U-box domain-containing protein 21 [Elaeis guineensis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SBY4 | RING-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105056399 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology