Basic Information
Locus ID:
gene.Thate01g11260
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 95595515 | 95596342 | - | gene.Thate01g11260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 29,991.06 Da | 72.11 | 82.98 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 101 | 143 | 3.1E-6 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 97 | 143 | 6.63E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 162 | 8.5E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 101 | 143 | 1.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 101 | 143 | 9.627196 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 116 | 125 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017697756.2 | E3 ubiquitin-protein ligase rnf8-B-like [Phoenix dactylifera] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A059Q2J2 | RING-type E3 ubiquitin transferase OS=Saccharum hybrid cultivar R570 OX=131158 GN=SHCRBa_010_J05_R_150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene.Thate01g11260.