Basic Information
Locus ID:
gene.Thate01g06360
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 44221127 | 44230203 | - | gene.Thate01g06360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 74,229.31 Da | 54.42 | 60.38 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 385 | 420 | 2.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 277 | 310 | 2.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 425 | 463 | 2.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 274 | 567 | 8.33E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 380 | 584 | 6.8E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 257 | 344 | 2.0E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 383 | 421 | 6.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 553 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 311 | 1.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 466 | 511 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 463 | 3.2E-10 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 430 | 464 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 390 | 426 | 10.205597 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 279 | 311 | 11.128319 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 430 | 464 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 390 | 430 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 279 | 311 | 13.415834 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 450 | 464 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 298 | 312 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 408 | 422 | 1.7E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 235 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_020241858.1 | WD repeat-containing protein 44-like [Asparagus officinalis] | 0 |
| Q6LA54 | Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC3H5.08c PE=1 SV=2 | 0 | |
| TrEMBL | A0A7I8KNM7 | WD_REPEATS_REGION domain-containing protein OS=Spirodela intermedia OX=51605 GN=SI8410_07009762 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology