Basic Information
Locus ID:
gene.Thate01g03840
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 26788082 | 26790970 | - | gene.Thate01g03840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 46,365.46 Da | 43.83 | 91.25 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 41 | 238 | 2.89848E-134 | - |
| CDD | cd18787 | SF2_C_DEAD | 249 | 366 | 6.12337E-42 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 61 | 222 | 7.5E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 262 | 370 | 5.6E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 105 | 390 | 3.69E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 26 | 244 | 2.6E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 245 | 409 | 3.9E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 55 | 252 | 6.5E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 289 | 370 | 4.2E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 36 | 64 | 10.720899 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 248 | 409 | 25.566635 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 237 | 28.648232 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 183 | 191 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_020251013.1 | eukaryotic initiation factor 4A-8 [Asparagus officinalis] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A804KAN0 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=GSMUA_86330.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology