Basic Information
Locus ID:
gene.Thate01g00570
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 3041286 | 3051361 | + | gene.Thate01g00570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 73,096.24 Da | 33.81 | 96.79 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 272 | 314 | 6.97382E-28 | - |
| Pfam | PF04564 | U-box domain | 268 | 338 | 3.6E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 477 | 515 | 8.4E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 395 | 433 | 1.7E-9 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 365 | 641 | 8.13E-46 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 342 | 2.74E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 353 | 662 | 1.2E-52 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 22 | 136 | 6.0E-6 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 268 | 341 | 3.1E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 517 | 557 | 1.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 394 | 434 | 1.6E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 435 | 475 | 0.057 | IPR000225 |
| SMART | SM00185 | arm_5 | 558 | 598 | 490.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 352 | 392 | 470.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 476 | 516 | 5.2 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 271 | 334 | 1.0E-34 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 528 | 565 | 9.2574 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 446 | 488 | 8.8024 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 405 | 447 | 12.7574 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 267 | 341 | 46.760136 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_017697401.2 | protein spotted leaf 11-like [Phoenix dactylifera] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A843VH80 | RING-type E3 ubiquitin transferase OS=Colocasia esculenta OX=4460 GN=Taro_025658 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology