Basic Information
Locus ID:
gene.Posoc10g10200
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 63254236 | 63259944 | - | gene.Posoc10g10200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 49,384.73 Da | 46.28 | 85.48 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 163 | 220 | 1.7E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 246 | 280 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 331 | 0.0021 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 126 | 417 | 5.13E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 70 | 419 | 3.0E-101 | IPR015943 |
| SMART | SM00320 | WD40_4 | 157 | 196 | 7.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 280 | 8.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 237 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 377 | 416 | 0.006 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 331 | 4.4E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 384 | 417 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 205 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 248 | 282 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 384 | 417 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 289 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 299 | 340 | 11.07656 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 267 | 281 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 403 | 417 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_009384738.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804LAG3 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103972211 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 8 | gene.Posoc01g16800, gene.Posoc02g14460, gene.Posoc02g24500 ... |