Basic Information
Locus ID:
gene.Posoc10g07470
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 36588809 | 36593084 | + | gene.Posoc10g07470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 40,608.86 Da | 58.13 | 78.13 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 44 | 77 | 8.6E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 40 | 94 | 8.24E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 114 | 1.1E-9 | - |
| SMART | SM00256 | fbox_2 | 48 | 88 | 1.6E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 42 | 89 | 9.603447 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19940.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_007147813.1 | hypothetical protein PHAVU_006G157000g [Phaseolus vulgaris] | 0 |
| O49421 | F-box protein At4g19940 OS=Arabidopsis thaliana OX=3702 GN=At4g19940 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7J7LR94 | F-box domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_013440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 12 | gene.Posoc01g26710, gene.Posoc02g34360, gene.Posoc03g11620 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.445 |