Basic Information
Locus ID:
gene.Posoc10g05900
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 22770541 | 22771713 | + | gene.Posoc10g05900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 44,928.25 Da | 44.65 | 89.41 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 41 | 1.9E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 42 | 1.7E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 50 | 1.2E-6 | - |
| SMART | SM00256 | fbox_2 | 16 | 59 | 8.8E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 16 | 56 | 10.318796 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039115237.1 | uncharacterized protein LOC120250479 [Dioscorea cayenensis subsp. rotundata] | 0 |
| TrEMBL | A0A8K0I7I7 | Putative F-box protein OS=Cocos nucifera OX=13894 GN=COCNU_05G001860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_05G001850, COCNU_05G001860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716347 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate05g23740, gene.Thate05g29380, gene.Thate07g07020 |
| Posidoniaceae | Posidonia oceanica | 11 | gene.Posoc02g16770, gene.Posoc02g16780, gene.Posoc02g16800 ... |
| Zosteraceae | Zostera marina | 9 | Zosma05g13040.v3.1, Zosma05g13280.v3.1, Zosma05g15120.v3.1 ... |