Basic Information
Locus ID:
gene.Posoc10g05280
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 19838932 | 19842932 | - | gene.Posoc10g05280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 46,109.43 Da | 49.97 | 72.29 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 282 | 309 | 2.4E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 320 | 348 | 5.6E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 316 | 350 | 4.71E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 276 | 307 | 2.51E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 351 | 382 | 9.3E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 313 | 350 | 4.2E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 272 | 310 | 9.5E-13 | - |
| SMART | SM00547 | zf_4 | 283 | 307 | 2.2E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 322 | 346 | 1.1E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 355 | 379 | 0.014 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 281 | 310 | 9.698511 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 320 | 349 | 10.30829 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 353 | 382 | 9.359745 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 324 | 343 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 357 | 376 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010916149.1 | zinc finger protein VAR3, chloroplastic [Elaeis guineensis] | 0 |
| TrEMBL | A0A0K9PC35 | Zinc finger (Ran-binding) family protein OS=Zostera marina OX=29655 GN=ZOSMA_30G00870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology