Basic Information
Locus ID:
gene.Posoc10g04890
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 18677046 | 18682021 | - | gene.Posoc10g04890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 56,314.69 Da | 49.47 | 88.04 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 339 | 469 | 3.39075E-61 | - |
| CDD | cd17939 | DEADc_EIF4A | 130 | 328 | 5.4846E-136 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 151 | 312 | 7.2E-39 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 352 | 460 | 6.8E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 195 | 480 | 6.19E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 116 | 334 | 4.2E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 335 | 499 | 1.2E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 379 | 460 | 1.4E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 145 | 342 | 4.4E-56 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 157 | 327 | 28.968889 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 126 | 154 | 10.433057 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 338 | 499 | 26.079514 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 273 | 281 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_020268827.1 | eukaryotic initiation factor 4A-8-like [Asparagus officinalis] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EKW2 | Eukaryotic initiation factor 4A-11 OS=Asparagus officinalis OX=4686 GN=A4U43_C06F10430 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology