Basic Information
Locus ID:
gene.Posoc10g04060
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 11962662 | 11970040 | + | gene.Posoc10g04060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 125,328.89 Da | 39.70 | 81.44 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 949 | 0.0042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 489 | 3.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 344 | 532 | 5.43E-27 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 977 | 1096 | 1.72E-6 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 499 | 955 | 9.42E-40 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 576 | 686 | 4.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 337 | 575 | 6.2E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 836 | 1107 | 5.5E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 342 | 381 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 489 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 622 | 5.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 533 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 828 | 865 | 35.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.1E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 536 | 579 | 19.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1002 | 1043 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 442 | 17.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 455 | 498 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.968365 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 949 | 9.836508 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 949 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_038988989.1 | protein TPR3 [Phoenix dactylifera] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XVX1 | Protein TOPLESS OS=Anthurium amnicola OX=1678845 GN=TPL_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology